集めた論文の覚書 ［海洋堆積物中の有機物と微生物］ Literature Review [Organic matter & microbes in marine sediments]

4月17日に研究室セミナーで、自己紹介がてらレビュー発表をしたので、そこで登場させた論文の文献情報を記録しておきます。39本＋α。年代順です。海洋堆積物中の有機物と微生物について、網羅的ではありませんが、代表的で重要な論文が多いです。タイトルをざっと眺めるだけでも、発表で何を話したかがだいたい想像できそう。

発表タイトル：

海洋堆積物中の有機物と微生物について

要旨：

海洋堆積物中の有機物は、地球表層環境の物質循環の中で重要な役割を果たしてきた。例えば海洋堆積物深部への有機物の埋没は、大気中に酸素分子を蓄積させる働きを持ち、地球システムや生物の進化にも大きく影響してきた。また、最近約20年の海洋底掘削プロジェクトの進展により、海洋堆積物中には海底下1600m以上にまでわたって大量の微生物が棲息していることも分かってきた。しかし、海洋堆積物中の有機物と微生物の相互作用には、不明な点がきわめて多い。本発表では、海洋堆積物中の有機物と微生物について、基礎的な事項を紹介した後、特に「海水と海洋堆積物の間の有機物のフラックス」「海洋堆積物中の有機物埋没を支配するメカニズム」「海洋堆積物中の有機物を代謝するプレイヤー」について、これまでの知見をレビューし、現在何が分かっていないのかについて議論する。

1.    Radiocarbon in dissolved organic matter in the central North Pacific Ocean

Williams, P.M., Druffel, E.R.M., 1987.

Nature 330, 246–248.

2.    Biogeochemical cycles of carbon and sulfur and their effect on atmospheric oxygen over phanerozoic time

Berner, R.A., 1989.

Palaeogeography, Palaeoclimatology, Palaeoecology 75, 97–122.

3.    Deep bacterial biosphere in Pacific Ocean sediments

Parkes, R.J., Cragg, B.A., Bale, S.J., Getlifff, J.M., Goodman, K., Rochelle, P.A., Fry, J.C., Weightman, A.J., Harvey, S.M., 1994.

Nature 371, 410–413.

4.    Surface area control of organic carbon accumulation in continental shelf sediments

Mayer, L.M., 1994.

Geochimica et Cosmochimica Acta 58, 1271–1284.

5.    Mineralogical and textural controls on the organic composition of coastal marine sediments: Hydrodynamic separation using SPLITT-fractionation

Keil, R.G., Tsamakis, E., Fuh, C.B., Giddings, J.C., Hedges, J.I., 1994.

Geochimica et Cosmochimica Acta 58, 879–893.

6.    Sedimentary organic matter preservation: an assessment and speculative synthesis

Hedges, J.I., Keil, R.G., 1995.

Marine Chemistry 49, 81–115.

7.    Empirical relationships for use in global diagenetic models

Middelburg, J.J., Soetaert, K., Herman, P.M.J., 1997.

Deep Sea Research Part I 44, 327–344.

8.    TEM study of in situ organic matter on continental margins: occurrence and the "monolayer" hypothesis.

Ransom, B., Bennett, R.H., Baerwald, R., Shea, K., 1997.

Marine Geology 138, 1–9.

9.    Organic matter preservation on continental slopes: importance of mineralogy and surface area

Ransom, B., Kim, D., Kastner, M., Wainwright, S., 1998.

Geochimica et Cosmochimica Acta 62, 1329–1345.

10.  Prokaryotes: the unseen majority

Whitman, W.B., Coleman, D.C., Wiebe, W.J., 1998.

Proceedings of the National Academy of Sciences of the United States of America 95, 6578–6583.

11.  Fluxes of dissolved organic carbon from California continental margin sediments

Burdige, D.J., Berelson, W.M., Coale, K.H., McManus, J., Johnson, K.S., 1999.

Geochimica et Cosmochimica Acta 63, 1507–1515.

12.  Organic geochemical perspectives on estuarine processes: sorption reactions and consequences

Hedges, J.I., Keil, R.G., 1999.

Marine Chemistry 65, 55–65.

13.  Sequestration of organic nitrogen in the sapropel from Mangrove Lake, Bermuda

Knicker, H., Hatcher, P.G., 2001.

Organic Geochemistry 32, 733–744.

14.  Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures?

Schouten, S., Hopmans, E.C., Schefuß, E., Damsté, J.S.S., 2002.

Earth and Planetary Science Letters 204, 265–274.

15.  A model of suboxic sedimentary diagenesis suitable for automatic tuning and gridded global domains

Archer, D.E., Morford, J.L., Emerson, S.R., 2002.

Global Biogeochemical Cycles 16, 1017.

16.  Organic Matter in the Contemporary Ocean

T.I. Eglinton, D.J. Repeta, 2003.

Treatise on Geochemistry, 6, 145–180.

17.  The importance of continental margins in the global carbon cycle

Muller-Karger, F.E., Varela, R., Thunell, R., Luerssen, R., Hu, C., Walsh, J.J., 2005.

Geophysical Research Letters 32, L01602.

18.  Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria

Schippers, A., Neretin, L.N., Kallmeyer, J., Ferdelman, T.G., Cragg, B.A., Parkes, R.J., Jørgensen, B.B., 2005.

Nature 433, 861–864.

19.  DATA REPORT: DISSOLVED ORGANIC CARBON IN INTERSTITIAL WATERS, EQUATORIAL PACIFIC AND PERU MARGIN, ODP LEG 201

Smith, D.C., 2005.

Proceedings of the Ocean Drilling Program, Scientific Results 201, 1–10.

20.  GEOCARBSULF: A combined model for Phanerozoic atmospheric O2 and CO2

Berner, R., 2006.

Geochimica et Cosmochimica Acta 70, 5653–5664.

21.  Preservation of organic matter in marine sediments: controls, mechanisms, and an imbalance in sediment organic carbon budgets?

Burdige, D.J., 2007.

Chemical Reviews 107, 467–485.

22.  Significant contribution of Archaea to extant biomass in marine subsurface sediments

Lipp, J.S., Morono, Y., Inagaki, F., Hinrichs, K.-U., 2008.

Nature 454, 991–994.

23.  Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights

Hansell, D., Carlson, C., Repeta, D., Schlitzer, R., 2009.

Oceanography 22, 202–211.

24.  New indices and calibrations derived from the distribution of crenarchaeal isoprenoid tetraether lipids: Implications for past sea surface temperature reconstructions

Kim, J.-H., Van der Meer, J., Schouten, S., Helmke, P., Willmott, V., Sangiorgi, F., Koç, N., Hopmans, E.C., Damsté, J.S.S., 2010.

Geochimica et Cosmochimica Acta 74, 4639–4654.

25.  Selective preservation of organic matter in marine environments; processes and impact on the sedimentary record

Zonneveld, K.A.F., Versteegh, G.J.M., Kasten, S., Eglinton, T.I., Emeis, K.-C., Huguet, C., Koch, B.P., De Lange, G.J., De Leeuw, J.W., Middelburg, J.J., Mollenhauer, G., Prahl, F.G., Rethemeyer, J., Wakeham, S.G., 2010.

Biogeosciences 7, 483–511.

26.  Chemosynthetic origin of 14C-depleted dissolved organic matter in a ridge-flank hydrothermal system

McCarthy, M.D., Beaupré, S.R., Walker, B.D., Voparil, I., Guilderson, T.P., Druffel, E.R.M., 2011.

Nature Geoscience 4, 32–36.

27.  Methane hydrate-bearing seeps as a source of aged dissolved organic carbon to the oceans

Pohlman, J.W., Bauer, J.E., Waite, W.F., Osburn, C.L., Chapman, N.R., 2011.

Nature Geoscience 4, 37–41.

28.  Clay mineral continental amplifier for marine carbon sequestration in a greenhouse ocean

Kennedy, M.J., Wagner, T., 2011.

Proceedings of the National Academy of Sciences of the United States of America 108, 9776–9781.

29.  Persistence of soil organic matter as an ecosystem property

Schmidt, M.W.I., Torn, M.S., Abiven, S., Dittmar, T., Guggenberger, G., Janssens, I.A., Kleber, M., Kögel-Knabner, I., Lehmann, J., Manning, D. a. C., Nannipieri, P., Rasse, D.P., Weiner, S., Trumbore, S.E., 2011.

Nature 478, 49–56.

30.  Microbial Extracellular Enzymes and the Marine Carbon Cycle

Arnosti, C., 2011.

Annual Review of Marine Science 3, 401–425.

31.  Viral abundance and activity in the deep sub-seafloor biosphere

Middelboe, M., Glud, R.N., Filippini, M., 2011.

Aquatic Microbial Ecology 63, 1–8.

32.  Marine subsurface eukaryotes: the fungal majority

Edgcomb, V.P., Beaudoin, D., Gast, R., Biddle, J.F., Teske, A., 2011.

Environmental microbiology 13, 172–83.

33.  Preservation of organic matter in sediments promoted by iron

Lalonde, K., Mucci, A., Ouellet, A., Gélinas, Y., 2012.

Nature 483, 198–200.

34.  Global distribution of microbial abundance and biomass in subseafloor sediment

Kallmeyer, J., Pockalny, R., Adhikari, R.R., Smith, D.C., D'Hondt, S., 2012.

Proceedings of the National Academy of Sciences of the United States of America 109, 16213–16216.

35.  Authigenic Carbonate and the History of the Global Carbon Cycle

Schrag, D.P., Higgins, J.A., Macdonald, F.A., Johnston, D.T., 2013.

Science 339, 540–543.

36.  Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

Orsi, W., Biddle, J.F., Edgcomb, V., 2013.

PloS one 8, e56335.

37.  Turnover of microbial lipids in the deep biosphere and growth of benthic archaeal populations

Xie, S., Lipp, J.S., Wegener, G., Ferdelman, T.G., Hinrichs, K.-U., 2013.

Proceedings of the National Academy of Sciences of the United States of America 110, 6010–6014.

38.  Quantifying the degradation of organic matter in marine sediments: A review and synthesis

Arndt, S., Jørgensen, B.B., LaRowe, D.E., Middelburg, J.J., Pancost, R., Regnier, P., 2013.

Earth-Science Reviews. doi: 10.1016/j.earscirev.2013.02.008

39.  Predominant archaea in marine sediments degrade detrital proteins

Lloyd, K.G., Schreiber, L., Petersen, D.G., Kjeldsen, K.U., Lever, M.A., Steen, A.D., Stepanauskas, R., Richter, M., Kleindienst, S., Lenk, S., Schramm, A., Jørgensen, B.B., 2013.

Nature 496, 215–218.

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